Scaffold Ga0172377_10710377

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0172377_10710377

Scaffold Ga0172377_10710377

Overview

Basic Information
Taxon OID	3300014206 Open in IMG/M
Scaffold ID	Ga0172377_10710377 Open in IMG/M
Source Dataset Name	Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Pumphouse #3 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	797
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → unclassified Clostridium → Clostridium sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Landfill Leachate → Leachate And Groundwater Microbial Communities From A Municipal Landfill And Adjacent Aquifer In Southern Ontario, Canada

Source Dataset Sampling Location
Location Name	Canada: Ontario
Coordinates	Lat. (^o)	43.442	Long. (^o)	-80.577	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F053314	Metagenome / Metatranscriptome	141	N
F067884	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0172377_107103771	F067884	N/A	RKHGTIPQVIRFETDAGGLRPGQLLSVDIPAAGLGDNYLVESVSMRDMQGAVNRYTVTAVSGDALGGWLEWFSALARQAQKFVLYDEDQVGMLKTAAETVIISDAAAEYDWGTAARKPESRVDRAHADFAETDWVHA*
Ga0172377_107103772	F053314	N/A	MRSTVTVIDNVVVRVWERGAVVRTYRTHNTWGAAGLNAIRNWFSGLGGTPVTHIAWVDENGVERARDIVTQRVILEEGALLIRQYLPSATSANGHTLTTIRAYNAQSGGTQFAEAVFDAIGIAKTANNQ

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