NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0172379_10013564

Scaffold Ga0172379_10013564


Overview

Basic Information
Taxon OID3300014208 Open in IMG/M
Scaffold IDGa0172379_10013564 Open in IMG/M
Source Dataset NameGroundwater microbial communities from an aquifer near a municipal landfill in Southern Ontario, Canada - Groundwater well OW334 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9377
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Leachate And Groundwater Microbial Communities From A Municipal Landfill And Adjacent Aquifer In Southern Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)43.442Long. (o)-80.577Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040370Metagenome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0172379_100135646F040370N/AMGSNNFFKSDLYDIHSIVQASMIVYPKETILHTLRDYFSKDSYYHFSKDQWGFPNTTDHTNLPPGADIPVGSYGSSAALGDLLSTRLFIGENYRHDGVYYPAILVKNGGTKYVPISINRESGAIQYEDIVFEDGYGNNTIVHSPAYFVTAGAWEGQIIIDVISRSLRARDDLAQLIGMCFAEITVDSLYDVGIIVKPPVIGSPSETDDRNDKLFRQSITLDIRTEWRREIPIGNIIDTIFFTATFEDLSNPTAPVSPNITINTEVNMLDMLLNS*

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