Scaffold Ga0172379_10013564

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0172379_10013564

Scaffold Ga0172379_10013564

Overview

Basic Information
Taxon OID	3300014208 Open in IMG/M
Scaffold ID	Ga0172379_10013564 Open in IMG/M
Source Dataset Name	Groundwater microbial communities from an aquifer near a municipal landfill in Southern Ontario, Canada - Groundwater well OW334 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	9377
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Leachate And Groundwater Microbial Communities From A Municipal Landfill And Adjacent Aquifer In Southern Ontario, Canada

Source Dataset Sampling Location
Location Name	Canada: Ontario
Coordinates	Lat. (^o)	43.442	Long. (^o)	-80.577	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F040370	Metagenome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0172379_100135646	F040370	N/A	MGSNNFFKSDLYDIHSIVQASMIVYPKETILHTLRDYFSKDSYYHFSKDQWGFPNTTDHTNLPPGADIPVGSYGSSAALGDLLSTRLFIGENYRHDGVYYPAILVKNGGTKYVPISINRESGAIQYEDIVFEDGYGNNTIVHSPAYFVTAGAWEGQIIIDVISRSLRARDDLAQLIGMCFAEITVDSLYDVGIIVKPPVIGSPSETDDRNDKLFRQSITLDIRTEWRREIPIGNIIDTIFFTATFEDLSNPTAPVSPNITINTEVNMLDMLLNS*

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