NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0121464_101372

Scaffold Ga0121464_101372


Overview

Basic Information
Taxon OID3300014288 Open in IMG/M
Scaffold IDGa0121464_101372 Open in IMG/M
Source Dataset NameUrban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00191
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterWeill Cornell Medical College
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1429
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Built Environment → City → Subway → Unclassified → City Subway Metal/Plastic → Urban Prokaryotic And Eukaryotic Communities From The Subway And Surrounding Areas In New York, Usa

Source Dataset Sampling Location
Location NameUSA:New York City
CoordinatesLat. (o)40.63Long. (o)-73.99Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007409Metagenome / Metatranscriptome351Y

Sequences

Protein IDFamilyRBSSequence
Ga0121464_1013722F007409N/AMSEAAKKAAAEMKLSLDEEKNLGFLIAMSKTNTEKITREILEGLSEDTGDSESYDVDSGGEDSEDRPWRPSHSVYGKSTIKENHLVNMRGRYFRDLSIVRADEGEKTCPHPEENEVV
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