Scaffold Ga0075323_1001826

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0075323_1001826

Scaffold Ga0075323_1001826

Overview

Basic Information
Taxon OID	3300014301 Open in IMG/M
Scaffold ID	Ga0075323_1001826 Open in IMG/M
Source Dataset Name	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleA_D1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2965
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Source Dataset Sampling Location
Location Name	USA: Antioch, San Francisco Bay, California
Coordinates	Lat. (^o)	38.05246563	Long. (^o)	-121.76914021	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002494	Metagenome / Metatranscriptome	554	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075323_10018264	F002494	N/A	MAGANRKADLWKKPGSTERIAAEEFSYPTGMVWCPMKMSGMALMRCAELQKEFGCGSVTQFRIVTTAKPGNVPFHWPWLRRGRECPERADEKEVRELRLALSPLKLVEKSRKNPRAYHCPACGGRKAFGARQCRSCWRVSARR*

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