NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0163163_10244089

Scaffold Ga0163163_10244089


Overview

Basic Information
Taxon OID3300014325 Open in IMG/M
Scaffold IDGa0163163_10244089 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1846
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008102Metagenome339Y
F042555Metagenome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0163163_102440891F042555N/AMKHRRIILIIFALLVLPVMVHAQAPGPTPAPSPVRSLSDNIAALSQRAASLLPYIDNEIVSKLIGWFELLGWVLGNCLAGFAMLRIAREENGEGGNLYWWFGRLGLFFVLSGTGLLIINGMTAIGYEIANGNESTQRSILQTLYVAQRDSFNESYARFQQNMFTVKVDGRETAVHPIELGSESILGIIVDTDSTIQNFDQKADVSQWDLSTMMTWLNFERALIEFGDLILVLLGAALALAMKLAMPFMIACIVDKHIASRTTYPFFYGVIALTLLWPSVSKIIRIVAYMWGNVAMAVGDDSPLYIWSYETMRA
Ga0163163_102440892F008102N/AMKGILGEAEKLVLHNNNLTRTMAQIGQTVRDVFALKRAIESMVVTRLSMIKSIKTRLMSGVFDPEADLRDFEDYLRNSIGRQEQDKIATMNRIAMFDATLARLYHDLQTARARQAATAAQMKAAKDKLDVELAKPQSDQCANCISDLKVEIASCEKMIVDLDTQITNLSTQIEDRVKRYNLTMEERVRIANRVKATDEAWSSLNIVKDSIFDAIQKGGMPSPSPQQ*
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