NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182000_10076962

Scaffold Ga0182000_10076962


Overview

Basic Information
Taxon OID3300014487 Open in IMG/M
Scaffold IDGa0182000_10076962 Open in IMG/M
Source Dataset NameBulk soil microbial communities from Mexico - Magueyal (Ma) metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1067
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location
Location NameMexico: Magueyal, Guanajuato
CoordinatesLat. (o)21.195Long. (o)-100.439Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000230Metagenome / Metatranscriptome1517Y
F086708Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0182000_100769622F000230N/AVAIREKEDVQLSEQPRKVKKGAIPEWAEGLYYNKGIFSEVLVYYDDESIYFECRGKDSGVVRYTFEMIEGLKIVEDEAEEQADSTE*
Ga0182000_100769623F086708AGGLYDNEVYTAFQPSIECANERRFCQVSETKETERVVAFEDQRMWRLLLARLHPDAGGDYDLFTFACAIRDEMSRTSSVAKDAEGEDSARSTEGLVTPFLRAWQNTMDDWSSGNRNALRN
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