Basic Information | |
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Taxon OID | 3300014491 Open in IMG/M |
Scaffold ID | Ga0182014_10002043 Open in IMG/M |
Source Dataset Name | Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 26062 |
Total Scaffold Genes | 32 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 26 (81.25%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden |
Source Dataset Sampling Location | ||||||||
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Location Name | Sweden: Stordalen | |||||||
Coordinates | Lat. (o) | 68.35 | Long. (o) | 19.05 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F001596 | Metagenome / Metatranscriptome | 666 | Y |
F003233 | Metagenome / Metatranscriptome | 499 | Y |
F006278 | Metagenome / Metatranscriptome | 377 | Y |
F006672 | Metagenome / Metatranscriptome | 367 | Y |
F010114 | Metagenome / Metatranscriptome | 308 | Y |
F017965 | Metagenome / Metatranscriptome | 237 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0182014_1000204310 | F006672 | AGGAG | MTAADTLPGESNAQIISSIINLVCPQCGGRMSEFQCEGRCCRNWLAEWEWANQTTRSSKSRRGHAGRPMR* |
Ga0182014_1000204319 | F017965 | GAG | MSKNIEHRDPLYLFVCHLEWHRRGNLAAYHELLAALDDRDSDIRIVAEALLHRSSPHREPTEETVEAW* |
Ga0182014_1000204321 | F006278 | GAGG | MFRAEIQWLTSGPTLKLEGKLVADWAEQAKCLITKDVLPKGLIVDLTEVSYVDSVGEQLLKWLAGVGAVFVAGSVYAFAVCDRLRLSPTQRISERRKRRHGNNEESPSIRHS* |
Ga0182014_1000204322 | F001596 | AGGAG | MSWFHSSTAPVDARNCALPAEIVACFQEQRNVLGRLAFLITGDQATADQAVVQACEMTLQGNSPFRDWLFEWAKAATIASAISHGTDAIRICEAAYKDRRCPHVEHLSQGDAEERAASLDLILGADGQELIAELDPLCRAVLVLRVAIRSSIQDCALRLNVSRAAVLGANCHAITWLHDGHVKPVEENHDASHAV* |
Ga0182014_1000204323 | F010114 | GAGG | MIIELNDDDTRLLYTVLLQQAQEHWSYADTSEVAQRFYKLATRFKRPVRELPNVTIA* |
Ga0182014_100020438 | F003233 | AGGAG | MKTRQILITILILATVWHSAAAQPKKKNMQADAPPLETILAGTSMQANSVVSDVLAIKPEMPLSPQDILKSYEIAMSLVADKTSADFSVIVQAQQTNQITRDQAEYLLLQRYQLAMMQYQVLSALHDVLKHDIDEASQQARQSLKTASSDTVLVVPFPGSAPAYR* |
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