Scaffold Ga0182013

Basic Information
Taxon OID	3300014492 Open in IMG/M
Scaffold ID	Ga0182013_10000008 Open in IMG/M
Source Dataset Name	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300014492 Open in IMG/M

Scaffold ID

Ga0182013_10000008 Open in IMG/M

Source Dataset Name

Permafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	220995
Total Scaffold Genes	203 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	126 (62.07%)
Novel Protein Genes	10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (70.00%)
Associated Families	10

Scaffold Components

Scaffold Length (bps)

220995

Total Scaffold Genes

203 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

126 (62.07%)

Novel Protein Genes

10 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (70.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Stordalen
Coordinates	Lat. (^o)	68.35	Long. (^o)	19.05	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Sweden: Stordalen

Coordinates

Lat. (^o)

68.35

Long. (^o)

19.05

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000482	Metagenome / Metatranscriptome	1089	Y
F000548	Metagenome / Metatranscriptome	1036	Y
F001412	Metagenome / Metatranscriptome	701	Y
F002165	Metagenome / Metatranscriptome	588	Y
F003396	Metagenome / Metatranscriptome	489	Y
F004841	Metagenome / Metatranscriptome	421	Y
F005675	Metagenome / Metatranscriptome	393	Y
F015508	Metagenome	254	Y
F022600	Metagenome	213	Y
F022705	Metagenome / Metatranscriptome	213	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182013_10000008113	F022705	N/A	MELFLNLCWLSLLLPAWLLWRRRHGSGKAVTSTGKRAPLVFLCALGCALILLFPVISATDDLHAMRPEMEESERGFRHAGHCACNLHAPVHSALADLPSSAALTTTLEQIGTILPFLPQTAGVFSALAPAGRAPPIGPLAVSTVPAASL*
Ga0182013_10000008117	F002165	AGG	MNESTVGKTVEKMAEKTGSQVEETIAQHELDLGRLKDALALLGVNACSWCKKFLRRSDPGALFDAGELVCYGCISGWWAHRCTELSSKDREILEGKLVYWLRGSHHAELFKDPAKLPESSLQELNLVATCLECRGTGSSLGEERCRYCAGRGTVWVIVSRNRE*
Ga0182013_10000008119	F003396	GGA	MCEDAGIVPRKPRKKTFSAAKVVREMARERVGSPKPSQLVKAKTTKAEKHKPTLGKLLADD*
Ga0182013_10000008121	F004841	AGG	MRKAKIHNKFREVPGQHGTPVTLTLLPTLAILEVVKKSAKSGKTPRPPRIRVPNNERAIFTIDSVRVVGVLQRVSLTGGSAVLSKGPIAHGTRADMDMKTVFGRVNAQIEFLQTGADGVPLAQAFRFLNLGATSARRFAAAAKQMQKEGYSDAPPAGFNLPAAETLGQLLHSVRRLAANMVAIRTQPQAVALNKANR*
Ga0182013_10000008126	F015508	GAG	MRKLFFLLAFSAAMLVPAFGQAPPAARKIDNAFVQQQFGDQFALVAEVQPVFGDLDGDGIEDVVIAARCKNPMLDQGEHNYTVMDPYYDFFGYGDPKLTTTFSEGDPARRGLVVLIIHGAGKEGWRSDKPKAKYVIVNLPYRTLSIRKMKNKKKSIEAVYIEESGDMGDSSALFFDGRKFRYVPMGGDMQ*
Ga0182013_10000008147	F000548	N/A	MATITSDGPRWIGIPARVFAMTFLLTLLSFAVALLLSIMGTVVYSQMKHVAPNLQFAYRHIAFPFAVTVGAIVLVLMLSMEIRNYRQRKTLEGIERVS*
Ga0182013_10000008164	F000482	AGAAG	MQFSRIHLAMAVGSAGLLVAVFLGYLYWMSNQGPVLARSEERDPLTHLPVSITMNPFRDRTIERIANQFISEIRDGNCRQLLAEWEKDYRKKRADFVCESEAQHPLISWNLVEWEDAPPLVILHYKGQRYTSPTQTATYKELFSVTEEKKDSGWMVTKYDSFY*
Ga0182013_10000008168	F001412	GGA	MKLNQVAKTVVLGLGVLLASSAFASNKGALHVREPLEFNGQHLSPGEYQLNWDGTGANVEVSFMQGKREVAKATAKVVELDRASSDDSVIVDHTTGKATISQVRFGGKKYALVIGPTEKAEMSDGTNK*
Ga0182013_10000008172	F022600	N/A	MAAYAAVTLLRPGTMLDALWVLNKAGHAQLASLGKGVGLGFAALSASLCAAAVGWFRRRYWGWVLGTTIIAINATGDFINGVKGEWLKGAIGVAIAGLLLFYMTRSGVRNFFRHG*
Ga0182013_1000000891	F005675	AGGAG	MWIHGNKQCSHWNWVAIFSYTASLAVSVAIWRGVFLAVEHLVK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0182013_10000008

Overview

Ecosystem & Geography

Associated Families

Sequences