Basic Information | |
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Taxon OID | 3300014492 Open in IMG/M |
Scaffold ID | Ga0182013_10000217 Open in IMG/M |
Source Dataset Name | Permafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 76704 |
Total Scaffold Genes | 65 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 28 (43.08%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden |
Source Dataset Sampling Location | ||||||||
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Location Name | Sweden: Stordalen | |||||||
Coordinates | Lat. (o) | 68.35 | Long. (o) | 19.05 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F000372 | Metagenome / Metatranscriptome | 1220 | Y |
F000633 | Metagenome / Metatranscriptome | 971 | Y |
F000985 | Metagenome / Metatranscriptome | 813 | Y |
F012097 | Metagenome / Metatranscriptome | 283 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0182013_1000021722 | F000985 | AGG | MKNVYEVLRQKELELTRLEKEVEALRVAAPLLSEEKESMAEAPKPSLAASAPPQPVRIPPVVAAQAAPAPARVAGWEDAAKRWP* |
Ga0182013_1000021733 | F000372 | AGGAG | VTDSALQSRVARRWTVIASGLLLLALGLVVIYTGPNAFYSPVALVVVSAIGLAALLLQVRFRRDLPIYSPLWLNVLGIVCATVSLFADLLRMPSRLLDLVAFVAVVCFGISGLLILHALRRRVQVPQSTETQ* |
Ga0182013_1000021737 | F012097 | AGGCGG | VNTLLGLLDEIPSPAEQPRATPIRDRSTRHSASPTALLHTEQIHALVHQLFFQQESKPVRHVGFVAIEACSETATLCLQVAKALAEEDRYDIGLFDAHPDSLPLQTKLQIPSPIGAELTWPIAPRLWLVPRQSWLPQGSAQRITEQNLSRLREIMTEFDFSILSCAPASWLTACIGQTCDGLVLVLTANKTRRLVAAQIKDHLTKARVPLLGTVLADRRFPVPQGLYRSL* |
Ga0182013_1000021760 | F000633 | GGA | MFFVNFVPEEGRWYCFAPTATGVQRIPVSMDASPFEAFTVAMDEQAKEVVN* |
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