NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182013_10178796

Scaffold Ga0182013_10178796


Overview

Basic Information
Taxon OID3300014492 Open in IMG/M
Scaffold IDGa0182013_10178796 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1302
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055365Metagenome138N
F066377Metagenome126N

Sequences

Protein IDFamilyRBSSequence
Ga0182013_101787961F055365N/AVHVMPTAAQVGAAPASHVGQVLGLSTSHPPEVDADSGGFEVLRDPGAAAAAMDPGFGILMANILQSGLLHNGDVYGILSQAITAYPGAADGDGAMTTTSLGLMSAIASVVVGHVNKVSHKNPHGITLADLGLSITYDFVANNGYIKFTMGTNSFMIQWGTGMTGNSAPGTYFSFSPQFPNNCFGVYGTAVCTEGFDSAAFVLTGVSTGAPSTSGFYAYNSSPGSRIVYWIAIGN*
Ga0182013_101787962F066377GGAGMPPIGIQTFYYGKKLPARAIAIAQVTAEDVSPADLIDIVNTPCLQGSLGIWTLTSGLAASPNFTAPDYNQSVTITGDIAYLVQNQFFQITSQFAADGVTPLYFYHNFGQSVSGATILNLDGSVLTPAPTVLFNGNYMYHDVPSTAPYQVRYVDSAGRVQVSLLHYNQVMPLSTNGDTSKGYAFTGGVIEVASN
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