NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182016_10000020

Scaffold Ga0182016_10000020


Overview

Basic Information
Taxon OID3300014493 Open in IMG/M
Scaffold IDGa0182016_10000020 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)171274
Total Scaffold Genes152 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)93 (61.18%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000858Metagenome / Metatranscriptome858Y
F003832Metagenome / Metatranscriptome466Y
F005268Metagenome / Metatranscriptome406Y
F007333Metagenome / Metatranscriptome353Y
F014888Metagenome / Metatranscriptome259Y

Sequences

Protein IDFamilyRBSSequence
Ga0182016_10000020103F000858GGGGGMRNGYLFAAYAVTWVIHIGYIATILSRYARLKQEIASLKKK*
Ga0182016_10000020109F007333GAGVECRNGTARHSTDTKIQEDIVNEELHHARSLGLSVALGAAMGAALGAATGHMGVWVAVGIAAYIAISLVGGAWTKRSDD*
Ga0182016_10000020129F014888AGGAGMNTALNVLLTTVALAGLYCAIPSSSHSSKSSVRAQQAVVVADGSDPMPLCRAKRCSQ*
Ga0182016_10000020131F003832N/AMKSTAKRTSSIATWHPAEGERISFQTSTGPETAILREVRWGLVWRDFILEDGRVIPEHRIAGCPQQKEWRKVEEVTVEEREECEERLLSMAATGMDPRTRDQPFWAELNQYLAYTYLRFKGTEDKGQDSPR*
Ga0182016_10000020132F005268GAGGMRGSDEKNSGQQDWKILSEAGLVEIRVEEFAERIRDVKRLVQVRLRELMDFDAGYKERESAAYSLGTLKGLELKVLANSPKRTDV*
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