NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182017_10000002

Scaffold Ga0182017_10000002


Overview

Basic Information
Taxon OID3300014494 Open in IMG/M
Scaffold IDGa0182017_10000002 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - 712E3D metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)164610
Total Scaffold Genes153 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)111 (72.55%)
Novel Protein Genes12 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)9 (75.00%)
Associated Families12

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000188Metagenome / Metatranscriptome1692Y
F000512Metagenome / Metatranscriptome1064Y
F000552Metagenome / Metatranscriptome1033Y
F000739Metagenome / Metatranscriptome913Y
F000775Metagenome / Metatranscriptome896Y
F000885Metagenome / Metatranscriptome849Y
F006229Metagenome / Metatranscriptome378Y
F007488Metagenome / Metatranscriptome350Y
F009917Metagenome311Y
F015120Metagenome / Metatranscriptome257Y
F059669Metagenome133Y
F098497Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0182017_1000000217F000885GGAGMASPKVVFAGEVAQIAGVGAVVAGIVLSLHHWGAAAALIGGIAAFFVGKKLRAS*
Ga0182017_1000000219F015120AGGMLELVKRFFKTRYVGLLEEDVARLRGENRALLNSLLGTAGFPPVEFAEPVKPVELPRLRRRSWQQTQRKNELDAMKG*
Ga0182017_1000000224F000512GGAMRSSVKIQIIRERHETPEEVARRLEAAGGQNRFGEPNYRVIWGWNRLAWIAGKFEDRDAHGDLVREVVELRLEPKYPQVNRWHVERWVPPEVYGSPREWYAKTVESVNGMSVPALGPYPERGEYEHCFTLQGRKGEFVQLTPTIVEHVARAIEWARRFPKAKQRGMLYEREAREEREYEEWAYTLMDDAVPALYGQPFVTVA*
Ga0182017_1000000225F000739N/AMSRRISHLRIWLKGIVAAGISGAAGGVMTGLAAVGIDPAHFNLQAGMGATVRIGMAAALINAVIGVAAYLQKSPLPDE*
Ga0182017_1000000229F006229GAGGMNTQNDVVALVNISTQKWPPRHRTYFGSLEIRTPEPGEAFAVTPIHGCKGIMDLGDKRTMEFPITAREIADDLVRELNGDSGEGSFHGMFAAAGPLPTEAELAEAHRKLDAFHRRLVDAADLEWERSHNPMFITDLERRAARELKLDKPWLYDPKPQAECPACGEKIKAGVAVCRSCRAILNREKAAEFGLVPRVTETPLDLMKLREKGSAK*
Ga0182017_1000000233F007488N/AVRIREYNDGDLEALRAIHAAQGFPYEFPDLRNPLFLTKLVLAGDETGAGGGKGIAGAALLRLTAEAYLLLDPKCGTPKERWQWLLGLHEATRRQAWERGLEDVHAWLPPEIAAKFGRRLARLGWVRDDEWTPYCKRLGATFELING*
Ga0182017_1000000237F009917AGGGGGMFSISSAILLAVVSIGAQFVVFLRWIHRRMRDDEINRVFLRDLALRHLPRIYRALYTMAERQGIELEELPIVNYVDLQNGGRRP*
Ga0182017_1000000246F000552GAGGMEAMRRKLVWLKKEKFQGWACSECAWAFNPIGPVVGQSIVEMMQRYEQQRDKEFTSHVCAEHPRATKNPR*
Ga0182017_100000025F059669AGGAGGVNPYYTQPPWEFLLTASRNTLQSYELSRLAHAANLRKELGALLDQYLEENTAAMLARWLMDQRERTVLGEETASAPAPPENKGRRASDNFLGDRIVPPRASRMRT*
Ga0182017_1000000261F000775GGAGGMKNLNSVFAAYLIGWGAFFLFYVSIAKRTSDLRAEVDRLKSSLTRTK*
Ga0182017_1000000271F098497N/AMAAPLLLLCDGCGQTASPAHLARRLQRLEWTTRYRPVHIQALLLGGIAPDADAAFLYSPEGNYQGEAANLLDALRISRAEKSADAILTECQKRGLLLTHLLECPLEPGVAPSGAQQLLEKHLPAVVARIRRSLRPKRLVLFSRELAAVAGKFTEAVLGSPVFTSSYGPFVLDGSLSESQMEEFRRTLTAGSVP*
Ga0182017_100000028F000188GGAGGMSVKPEMAFDVCWEVYRGAREVLEAKRGITALTWEVDAKYSWRPDLRPKLKDWVADFALAGQAALGGPQQASRMVLFRLYYLGLTPYDRARHFLGLSERSWVNWSEEIRRRCGEELLRRDLFPPRKYFNGSD*
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