NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182015_10000171

Scaffold Ga0182015_10000171


Overview

Basic Information
Taxon OID3300014495 Open in IMG/M
Scaffold IDGa0182015_10000171 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)92338
Total Scaffold Genes86 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)54 (62.79%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000838Metagenome / Metatranscriptome866Y
F003084Metagenome / Metatranscriptome508Y
F009411Metagenome / Metatranscriptome318Y

Sequences

Protein IDFamilyRBSSequence
Ga0182015_1000017128F009411AGGAGMSNDESRRQTGIARLASDLRAAKIELLSAQCATDRLRLQYSVDDIVSFGERHALKGAIASAGALCRFFSSVEDHLKQAEQQE*
Ga0182015_100001713F003084N/AMGMSILGASAAAQDEKNELTGMIGRIFISDQAILNEPPPDNLVHSGKGLTFEVNYARHLFGNQVYAISGEVPAVFNLDEKLGSLYGVVPINYKQIFVTPSVRVNLFPATAVTPWVSFGGGFGHFSENSQLIYSSGPNPGKSTTTGVMQGGLGLDVSPFRHRFSHVGFRGEVRDFWSGAPDLPLADTGKSRQHNYFVGGGVIWHF*
Ga0182015_1000017149F000838N/AMAGRAIRITSRIAFLLCGLTSLLTGAPYVILRGAELPVQSEWIIFVVALALVGVFNVALAMLPRSWIARACKKDRDDERLFSAPLKLLGGFAAIFYILALIGYFAPHSWNLNPQLMLVLCPMYFLKMAIDPAPVSIFFILAPMNAGVYGALGATLGYALLAFRRRH*
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