Scaffold Ga0182015

Basic Information
Taxon OID	3300014495 Open in IMG/M
Scaffold ID	Ga0182015_10001153 Open in IMG/M
Source Dataset Name	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300014495 Open in IMG/M

Scaffold ID

Ga0182015_10001153 Open in IMG/M

Source Dataset Name

Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	36023
Total Scaffold Genes	28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (71.43%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (66.67%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

36023

Total Scaffold Genes

28 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (71.43%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Stordalen
Coordinates	Lat. (^o)	68.35	Long. (^o)	19.05	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Sweden: Stordalen

Coordinates

Lat. (^o)

68.35

Long. (^o)

19.05

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021139	Metagenome / Metatranscriptome	220	Y
F026322	Metagenome / Metatranscriptome	198	Y
F042611	Metagenome	158	N
F049116	Metagenome / Metatranscriptome	147	N
F052724	Metagenome	142	Y
F060142	Metagenome	133	Y
F069068	Metagenome	124	Y
F069114	Metagenome / Metatranscriptome	124	Y
F089494	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182015_100011531	F069114	GGA	MADDRSTLGFGEEARLLEKILSPAEAQSLVLPPPDHPPVSGPGESTPLTGNLARPPSQAVPSRSGLAGYFAASAAPLRQSAQDAAPTDRSSDPQYVKVSSQGQVGYLPKASLPAALKIDRNLKVLDKG*
Ga0182015_1000115310	F042611	GGCGG	MSHIVPTAAQRFLTTYGGRTPFGKPHWRLMVASDRLVKESGVYRDWAPGLSTAEKGGLNFQANPDAPGCNYSRHDNRPLRVVTEMREVKKYPHAEGWILEKWFPASSYGTQAEWYSYKAIDGFTPMLGPYPESGDYEMVFGPWLKLPTTDTLQNLIAKYSAGINSRRGSPESRAQEYLLRYQYEEEQAEAKRKTEYDAMMRDHISPLHSSSLAASRWRQDLARRTGNGNEHIGIL*
Ga0182015_1000115315	F052724	N/A	MMGLLTAQVTALTLERKVLLDRLATLGLGGPLFSSVALPEASTEAVAEIDAEAEELERLMSLRRRPSKLADALTRKAYRDYNKVQAGPSVRWIPKADSIAAALDEAEAAGKKQA*
Ga0182015_1000115317	F069068	AGGA	MAHTRLITLNGSGGAFVAVSATTVTRRVEIIEDGSANGGTGQGLSYQFNDGSATPFTTTYTIEPQSEPIVLGTPVPQGAGFGMVIGTPPDNSGGYALAATLLINLRSASTNTTIVRVTELD*
Ga0182015_1000115325	F089494	N/A	LTPPQEKAASASALQAQILEQLTELKSKVEESLQQGRENGNELKMLRRELGLDGQHGRLPIVEATLIRHELRMEKTDARVDGLEIDKNEANGKAKLVVTLVALMGGGAGGTVIALLAHLMGPR*
Ga0182015_100011533	F021139	N/A	MNRIILRQAIPEDWPAIQQIHRQHQAAQGTNYELPNLFGRAIAIALVGIDEGGIIRNCIYVETIAEMRFVGCDPKATAFGRREIAGLGYVLKLQGFRWLECFVPRPLKRMIEKPLRRAGFACVDRELAHFTKDLRGTA*
Ga0182015_100011534	F026322	AGG	MYSVHQQYLDMAAGFHVIELRDEKGNRHLVQLAVGHDACPACGAVHPKDNLESLDPVAAVSQISQALNTSQQQMHAYAAKHGLAVK*
Ga0182015_100011537	F060142	AGGAG	MAVTGAIIDYTGAAGERNFTVFIQLTFSGSFTSGGDPLNLATLSNPNGLDVEGVFELPLSLAPAVYLEDIGGYYVQPKVAGSTLNAFLINVYQPSGTIVSGAYATAVTTGNVVLTMQKRRV*
Ga0182015_100011538	F049116	AGG	VSWTLGQVKARVRNLLDDPQGSYLTDSFLVPLICEVYDDANSQLASTQSSWDIAVVEVPGIAPGTPNLAPYQTGSGPLADLTDQPLRIDWKPAGDDPSYYRLVRNYEVLPDLQPREGMAGWEYRSEVIWLTNSSIAVDLRIRGEFGPPALTSDDSVLLSHPRIGYVVAYGTAALVATVRGNDAWTRQYEQKAVEGMDEIMEQLVRAEQGQVRRTARQTGRHRA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0182015_10001153

Overview

Ecosystem & Geography

Associated Families

Sequences