Scaffold Ga0182015

Basic Information
Taxon OID	3300014495 Open in IMG/M
Scaffold ID	Ga0182015_10003491 Open in IMG/M
Source Dataset Name	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300014495 Open in IMG/M

Scaffold ID

Ga0182015_10003491 Open in IMG/M

Source Dataset Name

Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	17614
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (78.57%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

17614

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (78.57%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Stordalen
Coordinates	Lat. (^o)	68.35	Long. (^o)	19.05	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Sweden: Stordalen

Coordinates

Lat. (^o)

68.35

Long. (^o)

19.05

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F030957	Metagenome	183	N
F032513	Metagenome	179	N
F094792	Metagenome	105	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0182015_100034915	F030957	GAG	MNTTTQIQRVNSLTYADVAGLNVGLTRMQGEDSVAFLERCYLATTCRQDSTYEGEQDQVCLQLGLNQWAGIAVSSTSLGMTITVCIGLVTVVLNGVTYTIPTVTMAPDDYWVWRKISDVVNDLNAITGVTATLLGPDGPALQIAKQSNQFTVPSEAIDMTDQMLAHANVIESSLTFSVAPGSYVFNPQTGELIFSGTLPSGLSVAYQYIAMPYNIVCSELGLFGLVEPSLATVGVSSDNVLAYQLREVVQAVMNADPSYWAQ*
Ga0182015_100034918	F094792	GGAG	MPPTGIQTFYYGKNLPARAIAIAQVTAEDVSPADLIDIVNAPYLPGSLGIWKASEGLATSPNFTAPDYNQSVTITGDVLYMVQNQFFQITNQFAADGVTPLYFYHNFGQSVSGATILNLDGSVVTPAPTVLFNGNWMYHDVPSTLAFQVRYVDSAGRVKISLLHYNQVMPLSTNGDTSKGYAFTGGMIELASAAVSYSIRFLVQNGYQALPPYEAPSYLPWFPRVRFSLQPPALEYPIQSFLPTRPYLLGYWIPGTVLGPNLIQFDRHGIYNDPNHLPDIVVFDSNQKIKYAMDGSANGEPETHGTLYPWKRNQISDVDPFTGRVAVVPTVLTTDTVYGFYSYFEPDVVYTALDVNPVTNPSIKNTVICFYYRATSNPLQEIYHQVFNDSGPIAGMTNDPNPPTWSGQTPASGTVFAEMVVGVSFGIATFEMTDVRTRGGGLAPAYQTIPQADNFWDLGYLDGRPYPVGGALVVYLPTRILNTMTRDVVAGIVNSVLPMGTIAAIRYYDPEGNESV*
Ga0182015_100034919	F032513	GAG	MAKPFYLIWQEGTTVLEGYDGANWIDGQLTFPIVFPGVTTTLLALSLSSSASVNLTFETLINVAFYLTGSDAPTVQGEWPYITDAYGNATASVTGGVEISFDNGLTWNRFSNTVGLESTPSTWLPLPQEAVGSVGTAGQIGAFDTAHMLVRYVIPPSVSLTKVLDVQLQVDCDVV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0182015_10003491

Overview

Ecosystem & Geography

Associated Families

Sequences