NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0182019_10126551

Scaffold Ga0182019_10126551


Overview

Basic Information
Taxon OID3300014498 Open in IMG/M
Scaffold IDGa0182019_10126551 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - 812E2M metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1594
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004633Metagenome / Metatranscriptome430Y
F054972Metagenome / Metatranscriptome139Y
F076221Metagenome / Metatranscriptome118Y
F098319Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0182019_101265512F076221N/AMLRPMNDREAVKVLIVNDDGQYLTGTATDLEFTDDRSKAAIFDYLGDRVAERIELVRRAHGRVWIAVKLDPREVYEFCDRCGCRMRAFRTFFNGQEFLCGDCREDGAGT*
Ga0182019_101265513F098319GGAGMKVFLRNTQTGWFYQEPSKWTPAQEEALDLAQVARAVERIFEAHLENVEILLCYDDPRYDLILPVPPSPSRDEALGQRQPNRDSLPGEKGKPSAPGSKGRQL*
Ga0182019_101265514F054972GAGGMLKSLRTREYFGQGQWTLDASQAQDFPDSGKAIDACLKYHLTDVELVLQLDAEPQDAFDTHLRLFDYGPYAPSY*
Ga0182019_101265515F004633N/AMKFLWAIIVYLVIGLLLSWGILLTIKGEPWLLIVGFLTYAVAFAKL
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.