Basic Information | |
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Taxon OID | 3300014498 Open in IMG/M |
Scaffold ID | Ga0182019_10327540 Open in IMG/M |
Source Dataset Name | Permafrost microbial communities from Stordalen Mire, Sweden - 812E2M metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1028 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen → Permafrost Microbial Communities From Stordalen Mire, Sweden |
Source Dataset Sampling Location | ||||||||
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Location Name | Sweden: Stordalen | |||||||
Coordinates | Lat. (o) | 68.35 | Long. (o) | 19.05 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F004753 | Metagenome / Metatranscriptome | 425 | Y |
F010341 | Metagenome / Metatranscriptome | 305 | Y |
F012089 | Metagenome / Metatranscriptome | 284 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0182019_103275401 | F012089 | N/A | KQRASKPVEVWISDLYEKDGRLLIRYTVCNHGTEPYTIETPLVYQLDGVRSTQSLYGLQNSQLGDEQAAKLKIKQETPVKVLDGQTQTARIAPGEEAVGVVALDMASSTQPTVLRFQFPGSKQSEDGLSNGQQIQIAAFLVR* |
Ga0182019_103275402 | F010341 | GAGG | MADPFTVKPVYNALNQYIRNRADIGAGRAMRDGVLEPSNPFEGKAARPPRRWFVLLSILAAMVLGFFLYFNNLL* |
Ga0182019_103275403 | F004753 | N/A | MDMNDQNDANGVRPPVPTELASDAREQIRDWEFLFWAFLLFGLGRLAWLYLYQPENKGFHLGLSCGFVFCGALGFLMRWVFSPKRT* |
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