NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182024_10004322

Scaffold Ga0182024_10004322


Overview

Basic Information
Taxon OID3300014501 Open in IMG/M
Scaffold IDGa0182024_10004322 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32848
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (36.11%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002108Metagenome / Metatranscriptome592Y
F006313Metagenome / Metatranscriptome376Y
F006428Metagenome / Metatranscriptome373Y

Sequences

Protein IDFamilyRBSSequence
Ga0182024_1000432216F006428GGAGGMRKVLWSTLFVVTLLSALPTYAQNPNYDVGPLWRVVYYQIKPGQGEAFWKDFRENLKPSYDALKKEGIINDYKVWTNVTTDGPHDWDVALALMFPNWGSMDQADAKAATIIAKHYGSREAMIEAGKKRNDLREVVASKLAHEVMPK*
Ga0182024_1000432232F002108N/AMSQTPELVTPAPFSTAPARQERERPFRVKFRGSVLTLMRLPNRREVRGKLHQLSTTGGLMHVEQPLDEKLKVELIFQLGETTIHERAEIMFPMWATQGWLQPFRFIDLSEASKNALQIGLQSFVQRVQPASEVAANDPPA*
Ga0182024_100043229F006313GGAGMAITEIKAGQIVVVDGLVGVYRVVAVSRDGQMADIEKFDVSRQKSLGDPVRSVAIDKLTSYEEDATQAAARIVREAATED*
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