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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300014501 Open in IMG/M |
| Scaffold ID | Ga0182024_10004724 Open in IMG/M |
| Source Dataset Name | Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 31034 |
| Total Scaffold Genes | 25 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 18 (72.00%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost → Permafrost Microbial Communities From Stordalen Mire, Sweden |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Sweden: Stordalen | |||||||
| Coordinates | Lat. (o) | 68.35 | Long. (o) | 19.05 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F042611 | Metagenome | 158 | N |
| F049116 | Metagenome / Metatranscriptome | 147 | N |
| F052724 | Metagenome | 142 | Y |
| F060142 | Metagenome | 133 | Y |
| F069068 | Metagenome | 124 | Y |
| F089494 | Metagenome | 109 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0182024_1000472411 | F052724 | GAG | MMGLVTAQVDELIRERRILLDRLATLGLGGPLFNSPSWPDPSENTAEKAEPIDSEAEEMEKLMNLRRRPSKLADALTRKAYRDYNRAQAGPSVKWIPKVEAPKAQAQKLDTMTAALDEAEAFGKKQA* |
| Ga0182024_1000472414 | F069068 | AGGAG | MAHTRLITLNGSAGAFVAVSATQVTRRVQIIEDGSANGGTGQGIAYQFNDGSATPFSTTYTIEPQSEPIVLGTPVPQGGGYGMVLGTPPDNSGGYTIAATLLINLRSASTNTTIVRVTEFD* |
| Ga0182024_1000472421 | F089494 | GGA | MATPRVKLATPGTIDAQILEQLAEVKGKVDESLEQGRENGNELKMLRRELGLDGQHGRLPIVEATLIRHEVRMEKGETRIDKLEIGNSEANGKAKLVATSLALLGGGAGGALIALIAHLLGVH* |
| Ga0182024_100047243 | F060142 | AGGAG | MAVSGAIIDYTGAAGERNFTVFIQLTFSGSFTTGGDPLNLATLTNPNGLDVEGVFELPLSLGPAVYLEDIGGYYVQPKVPGSTVNAFLINVYAPGGSIVSGAYNTAVTSGNVILTMQKRRV* |
| Ga0182024_100047244 | F049116 | AGG | VSWTLGQVKARVRNLLDDPQGSYLTDDFVVPLISEVYDDANSQLASTQSSWDIAVVEVPGIPPGTPNLGPYQTGTGPLAALTDQPLRIDWKPAGDDPSYYRLVTNYEVLPDLQPREGIAGWEFRSEVIWLTNSSIAVDLRVRGEFGPQPLTSDESVLISHPRIGYVVAYGTAALIATVRGNDAWTRQYEQKALEGMDEIMEQLVRAEQGQLRRAGRQTGRRGSYGH* |
| Ga0182024_100047246 | F042611 | N/A | MSHIVPKATQRFLTTYGGRNPFGKPRWRLLVGSDRLVKESGVYRDWAPGLSTAEKGGLNFEPNPHAPGCNFSRHDNRPIRVVTEMREVKKYPHAPGWVLEKWFPASSYGTQAEWYSYKAVDGFTPMLGPYPECGDYEMIFGPWPKAPTTDTLQDLIAQYSAGINNRRGSAESRAQEYLLRLQYEEEQAEAKRKIEYDAMMRDHISPLHSSSLAASRWRQDLARRTGNANEHIGIL* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |