NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182024_10009097

Scaffold Ga0182024_10009097


Overview

Basic Information
Taxon OID3300014501 Open in IMG/M
Scaffold IDGa0182024_10009097 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20677
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (57.14%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000465Metagenome / Metatranscriptome1105Y
F001247Metagenome / Metatranscriptome737Y
F002000Metagenome / Metatranscriptome606Y
F025534Metagenome / Metatranscriptome201Y

Sequences

Protein IDFamilyRBSSequence
Ga0182024_1000909714F002000N/AMVRKKGQGKTDMLKAVKTLIHRMTSHLQLISAYLETEDYTKALGKTREAIKEMHALAKSLTGLANVGMTVPLDGAVVVPHGSTVVSYEDVNVDVDKDEVQAVGKSEVLAGTGMTIRRRSENLILPS*
Ga0182024_1000909715F001247GAGGMKTKTWKVISNTGKEAALESGLEKKEVQKPTHISASEFVHWLGPQQSRVDDDSLRSLFKL
Ga0182024_1000909717F000465N/AMGIAKSIYNQKMRALAIKKSSSEKTTGFQEMGTLRCDGCGEEFFIGHNPSSADKWIAAKQAAWLEKVLAEEHERDKTHSDRIELPN*
Ga0182024_100090977F025534AGGAGMPLPEEVHRRLTARAVTDPDVASLLATFTKPDETVSEPPLDQVTEDAGTPKL*
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Institute for Fundamental Biomedical Research
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