Scaffold Ga0182024_10045860

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0182024_10045860

Scaffold Ga0182024_10045860

Overview

Basic Information
Taxon OID	3300014501 Open in IMG/M
Scaffold ID	Ga0182024_10045860 Open in IMG/M
Source Dataset Name	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	7047
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (88.89%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Stordalen
Coordinates	Lat. (^o)	68.35	Long. (^o)	19.05	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F029207	Metagenome / Metatranscriptome	189	Y
F057544	Metagenome / Metatranscriptome	136	Y
F060156	Metagenome / Metatranscriptome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182024_100458605	F060156	AGG	MFAGVEIKTMALNTAAAYGMYSQDVALDDVVHTLNQAGFENEDICMMLSPTHPISALVRDASLFNSECESTAVTAGLIGWL*
Ga0182024_100458606	F057544	AGG	VLIPTVGFFIKSQAFFHALISREAPALCGNARTLVGLGFSDDEADRFENQLRSLGVLVYVSCSESAKTMWACEVLRHTGAREAAILEERMSQAATA*
Ga0182024_100458607	F029207	AGG	MCNAVARSTPKEGQRALNRAILVMLVPPIGIMVFGVGFAFRYGKRRDEEQDRGVD*

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