NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0182024_10289731

Scaffold Ga0182024_10289731


Overview

Basic Information
Taxon OID3300014501 Open in IMG/M
Scaffold IDGa0182024_10289731 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2171
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila → Acidipila sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014894Metagenome / Metatranscriptome259Y
F036810Metagenome169Y
F045709Metagenome / Metatranscriptome152Y
F070426Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0182024_102897312F014894AGGAGGMSIGIPGISMYFDHTQVKPFIKDHSKKAKELFDERVVPAVIRGTCKALEVVANNTADVHDYLIAKIKTKQSA*
Ga0182024_102897313F045709GGAGGMNLTPSQKGSFLAGVGLWVLIWASVWKADDIGEAMRIQRWFNSTRCLRWIGQHKSTSLLGTELINYGSHGLDPLGVSFSLGGTLVNVLVIYLVLPCLETLLHRRGTAGATQ*
Ga0182024_102897314F070426AGGAGGMILELMAATEASVLSASWIRRSRMRRRQILLGGSTSEINLPFLDRYLRQQTANPTRLQTIAAKKLAAGCRRVVHTQAFELLVLKLIQSASRRSRRKSEISKVEVIL*
Ga0182024_102897315F036810AGGAGMSQPEGTRVSAWIRLQSFAAAVQLSIERRSFERKLETIVRAALAHQSGGLAAGNRQYKLLTAQVESICVDFTSRWNIDPNLLDAQIPAIRKLNALANPAPKPEPVVLVSLGVVAAVALFFLIGVLAGLTSVGYHLLGGR*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.