NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182024_10572282

Scaffold Ga0182024_10572282


Overview

Basic Information
Taxon OID3300014501 Open in IMG/M
Scaffold IDGa0182024_10572282 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1420
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008540Metagenome331Y
F011572Metagenome / Metatranscriptome289Y
F013506Metagenome270Y

Sequences

Protein IDFamilyRBSSequence
Ga0182024_105722821F013506GGAGGLNYQHLHYQFPAKPFQRWHVIEDKSVPRGLRFRHARQPGEKPDPKVNFGTEELSARLEHAGVEYMRVAFGNTPHSFDLASTMLALGEIAGEGLDDIWHMVIPWVRDDGFYAVCTREYMPFQDACRLFGFDIPAGKPSVPKRIKRDIARGRTSLFGELLETRELNRWDLLHTVMLSDGKTTFDVATYLPGDRWP
Ga0182024_105722822F008540GGAGGLRTYQPERALIARETRKENRDELAKMLAQIAMERAARLPPSVLPVSLETQFQSSIHRTREDVQRAKDVQSADILRWLHS*
Ga0182024_105722823F011572GGAGGMDTNRIFTNLFGGWLTAADKAAAATINYTKLTVVPCVCDLTQKATLATGKTLVKVGAKLTDRCTTK*
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