NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0182021_10066441

Scaffold Ga0182021_10066441


Overview

Basic Information
Taxon OID3300014502 Open in IMG/M
Scaffold IDGa0182021_10066441 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (Illumina Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4191
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F075360Metagenome119N
F088757Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0182021_100664411F075360N/AMLQFERINRLSGVCLDEEIPIAWVDNHVIIAQDLSLAVGLRVQYPDTLFVSSEQADELHNAFSSMLNQMAVMGDGEARLQFLTICHNQYDELLDDYLLTMPQGNPLLAQFKRDIGQHYREKAAANQLRRYSCYLFIGIEPIVEYSERIKRHRKLSPREHWARRVSNFLRDTFELSMDEAANMTEEEWNTAVNVLSKQVQQAHAVLK
Ga0182021_100664412F088757GAGMKNMSRKRAVEVVTLNLPGMLAALTGTRAREWKLRDGPDSGCGVDYYYGHRQGNEAYINIDQGHFAISVAGETLFTGDPAEDPRLKRWVSEY*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.