 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300014502 Open in IMG/M |
| Scaffold ID | Ga0182021_10079058 Open in IMG/M |
| Source Dataset Name | Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (Illumina Assembly) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3818 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen → Permafrost Microbial Communities From Stordalen Mire, Sweden |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Sweden: Stordalen | |||||||
| Coordinates | Lat. (o) | 68.35 | Long. (o) | 19.05 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F037652 | Metagenome / Metatranscriptome | 167 | N |
| F050262 | Metagenome / Metatranscriptome | 145 | N |
| F064316 | Metagenome | 128 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0182021_100790581 | F037652 | GGA | MDPIPYTHFWSEEPEAQRRAWRPTDEVRRRLMRLWMIQALLLVAIVVVGALLAKESKRMPPIYARLPNGVVFETTAGDLQMDRLARTELVNNVLQILYYQEGSFNYLETVRQNVKPQLLGRFRAEMQDASKQTNSTVYLNVVETFEAVNVPAQGFDAVTKGLLSKRSSLESASAPIYVRTRWLRSGDRYLLSR |
| Ga0182021_100790582 | F064316 | N/A | MLGNAKEEASLEVADPKAVKPARKVGALKMLLRQFEATGNPSLQGEEVLPPKLVGDGNYHWYPLAWLRWLAQWETAKTAALVVILLGLLVVYGLISQRRSCQVSLPEPSTEMLLKAKGFDAFNQNQAEAFILFVAHAANQASSEGMPNLNLLEGSIDSAIYLRLQQKGMSQQLKNVPPAEYPIHTLYISEVTRWRYNPATRIVSACVKGFRMSHTLSGKSGMEPYRAQMEIFWEPMSNRNKWGYYVQRLDEFYGAAAEAYDSELKTRDRTGA* |
| Ga0182021_100790585 | F050262 | N/A | IIILGLVVTGVAQFLLVSKINVYTDNVKTGVLQALSDTIVKYQTMSVGETNVSVSEDLLPHIPSGTLRLEKSGPANGVYTLQGSVTWRAFPHGDDSFLFHEQLTLEVPE* |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |