Scaffold Ga0182021_10294493

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0182021_10294493

Scaffold Ga0182021_10294493

Overview

Basic Information
Taxon OID	3300014502 Open in IMG/M
Scaffold ID	Ga0182021_10294493 Open in IMG/M
Source Dataset Name	Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (Illumina Assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1910
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Stordalen
Coordinates	Lat. (^o)	68.35	Long. (^o)	19.05	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F075360	Metagenome	119	N
F088757	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0182021_102944931	F075360	N/A	MLQFERMNRLSGVCLDEEIPIAWVDNHLLVAQDLSLAVGLRVQYPDTLFVSSEQADELHNTFSSMLNQMAVMGDGEARLQFLTICHNQYDQLLDDYLLTMPQGNPLLAQFKRDIGQHYRDKAASNQLRRYSCYLFIGIEPIVEYSARIKRHRKLSPREHWARRMSNFLRDTFELSMNEAANMTEEEWNTAINVLSKQVQQAQAILK
Ga0182021_102944932	F088757	N/A	MSHKQAVKVVTLNLPRMLALLTGTRARDWKIRDGPDSGCGIDYYYGHRQGNEAYINVDQGHFTISAAGETLFTGDPAEHPRLKRCVSEG*

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