NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134508_104242

Scaffold Ga0134508_104242


Overview

Basic Information
Taxon OID3300014550 Open in IMG/M
Scaffold IDGa0134508_104242 Open in IMG/M
Source Dataset NameHuman fecal microbial communities from ulcerative colitis therapy, University of Washington - UWIBD01P788T3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Washington
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2633
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → unclassified Roseburia → Roseburia sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Commmunities From Fecal Microbiota Transplantation (Fmt) For Ulcerative Colitis - University Of Washington

Source Dataset Sampling Location
Location NameUSA: University of Washington
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F097172Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0134508_1042422F097172AGGAGGMKKNVFKKLMCAVLATACVATAVVPAMADDVVTAEAATKKVTSAYKYHIDGYDKKGYPIDGFSKTSFYKDLNSLPSVKTGKTTINVPAVTSSVKSVSKEKGEPCYESYVKFKAPKTGKYVVTLDNLQGTDDKSLKSLSCSLCEIAKTGKKYTLSGFEPDCNTVGKYDTLCENNYLARLRTILDNYKAEHPEYADVIEETYEYQKDLVNKYPVDKIKFTTQLKKGQTYVFVIDNRGMDKAVPPYFTTHGSDEQSCLWGGNYLKAYSFDINIEYRK*
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