Scaffold Ga0180007_10224493

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0180007_10224493

Scaffold Ga0180007_10224493

Overview

Basic Information
Taxon OID	3300014656 Open in IMG/M
Scaffold ID	Ga0180007_10224493 Open in IMG/M
Source Dataset Name	Groundwater microbial communities from the Aspo Hard Rock Laboratory (HRL) deep subsurface site, Sweden - MM_PC_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1185
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Groundwater Microbial Communities From Three Deep Subsurface Sites In Europe

Source Dataset Sampling Location
Location Name	Sweden: Oskarshamn
Coordinates	Lat. (^o)	57.4344	Long. (^o)	16.66	Alt. (m)		Depth (m)	171
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F069437	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0180007_102244932	F069437	AGGAG	MPVKIKKTDGKYRVTHGGKTSAKATSLKKAKAQERILNAVSHTSWRPTGKKAKKTKR*

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