Basic Information | |
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Taxon OID | 3300014657 Open in IMG/M |
Scaffold ID | Ga0181522_10644354 Open in IMG/M |
Source Dataset Name | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 644 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Michigan | |||||||
Coordinates | Lat. (o) | 47.1149 | Long. (o) | -88.5476 | Alt. (m) | Depth (m) | .1 to .2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F004301 | Metagenome / Metatranscriptome | 444 | Y |
F026465 | Metagenome | 197 | N |
Protein ID | Family | RBS | Sequence |
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Ga0181522_106443541 | F026465 | N/A | AGLYDTVKKELRRMKSQAEADLAAATFREGRDILAQPEIHASLSTRPHPNSYFAAKGKTMADYYEFLLHNSPRGSVANLVGKLREIGTEPTQ* |
Ga0181522_106443542 | F004301 | GGAG | MTAMQFSLFNAQPQVATANTEPSVNARNAKRQLDTLRSQLATAQADLEDVNYNLSVVTMHQRASREGKIDANWWKGAMRFGMLDLDEQPAYRLGSYPVKVMRWIRHLIFTLHAERRDVQSGIA |
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