NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134314_100012

Scaffold Ga0134314_100012


Overview

Basic Information
Taxon OID3300014711 Open in IMG/M
Scaffold IDGa0134314_100012 Open in IMG/M
Source Dataset NameSurface water microbial communities from Bangladesh - BaraHaldiaSW0111
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Tennessee
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24442
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)31 (91.18%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Surface Water → Surface And Well Water Microbial Communities From Bara Haldia, Bangladesh

Source Dataset Sampling Location
Location NameBangladesh: Bara Haldia, Matlab upazilla
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025975Metagenome / Metatranscriptome199Y
F048255Metagenome / Metatranscriptome148Y
F072099Metagenome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0134314_10001223F025975AGGAGMEQSYNNPASRNTMRAAGGALKNGAAIGGGGNQTQGKGEIPGKVSVPMPGTNTTQSKETGGKAKTPVGFNSGIINGMI*
Ga0134314_10001224F048255GGAGMATTITIELADDGTITVTSPEMTEPYQCQSADECAQFIGKMLAEETGEAPEEQATEGKEDYGQMWNEEAASRKPQPGLMA*
Ga0134314_10001225F072099N/ALEIIMKYRNEPRIVLLARVDFPLVELGGKRLDTLREDFYDNAVNLQNNGRKPAQLISPYDIACSGGEPYAVWS*
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