Basic Information | |
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Taxon OID | 3300014712 Open in IMG/M |
Scaffold ID | Ga0134412_100014 Open in IMG/M |
Source Dataset Name | Human fecal microbial communities from obese patients in Germany - AS62_18 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Hohenheim |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 126242 |
Total Scaffold Genes | 107 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 88 (82.24%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | (Source: IMG/M) |
Source Dataset Ecosystem |
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Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Obese Patients In Germany |
Source Dataset Sampling Location | ||||||||
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Location Name | Germany | |||||||
Coordinates | Lat. (o) | Long. (o) | Alt. (m) | Depth (m) | Location on Map | |||
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F043413 | Metagenome | 156 | N |
F055739 | Metagenome | 138 | N |
F102166 | Metagenome | 102 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0134412_10001446 | F043413 | AGGGGG | MTERELREKLQSAYGTMPDATRAAFEHSLTHHRVETRHPARMSRRMRTIVTLALMLMMLTAVGVAAAKLASVTDYPPPSGLTPEYMSHLVTLNEAYDGDLLTLSVNDLVFDGTTVDVAMNVQPKAGKQVFMDMEVTAECAGRAYTLEIEGCGGGDFMSGMFLPDGTGSWSDSPFGFDGVLWDDDMQSPPEGVPIAWTMTFELLQPVWEVEYLPDAQYQALLAGGADALEAYVQNNWRQQIITVTYGSLVEYQYAAEAAMLADGTITEPLSGSRTEQLLSCGGFRRADTIIVQFTTDFVDDYAHPELVGKRIGMRDYDLVIDNVNLSFMRANITMHYEFSAAYTEDEIRQMTNLPNAWRVYVNGQTEAGYDAYANFQQVTNGAYGVDTPEQLTVGFDFYPAETDITRLTFVPIRNMGEKWDACHPDAEKGFTLELQE* |
Ga0134412_10001448 | F055739 | AGGAGG | MTEQKLREKLQFSYGNMPDATRAAFEHSLTHHRAPETHRSIGLNRTMRIVITAVLMALMLTAVGVAAARFFSVTDVHPAQDGTEGDYQAHYLALAERYDSDLLSVSVNDAVYDGSVLAFTMEMAAKTDDVLAVEVRICGECDGKMYRFDPLDVYGGEFQSLLMLPDLGGTFDGEKYAAEGILLDENGQMPPEGKTIAWTIEIDVLKAVWQTETMPDDLYEALSEEDDVAQYIREQAAQHMITLTDAGVEDYLLEMCGAGWNEIEQMSKADLLLRCGGFERAETYTVAFATEGNTQYVHPELAGLRIPLDGYTAVVDYVRASFLGGCVVLHCEAPEGTALPNGTALPDVWRIYRNDEQNPAGEAGWARASGYAGVPGGVVDVNQLSICLYFAPCADLTSLRIVPEGEAGFTLNLSGEKGTE |
Ga0134412_10001479 | F102166 | N/A | MEETWRISPEMRAFLMKKLLSLLLVLALALVPTLSLADDDAACQNLYNMLLDELKSVDLEMTADEESYRIYLGYALDKNSLGDADVIFDAYSDAVTINVSYSNPLDEALVPQVISFFNRVNSTLYVGKLMVIKSDNVWYAAYEIFLSVDPENITDWDRNNVLAYTALALDTMEEMVDYITEIANGESADNVFAMWQADIGAV* |
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