NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157377_10272787

Scaffold Ga0157377_10272787


Overview

Basic Information
Taxon OID3300014745 Open in IMG/M
Scaffold IDGa0157377_10272787 Open in IMG/M
Source Dataset NameMiscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1105
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F085533Metagenome / Metatranscriptome111N
F101965Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0157377_102727871F101965N/AIGFDRVQSAEDRYLFDSAGRLVYQVGHVFTLQMHIVDKSHARGLFVGDFLVIEENGPRCLNNLPLEIMRTQL*
Ga0157377_102727872F085533N/AMPAPVPPQALDDGKIVSGFGTVDLRVHLFHAPGDTAMNDGHIREIYRQSLEINCATFAAGEYGIAYQVLLVALECGQRLRDLSFLSEVQRLAEKQSRYLDDHFPQCEYSNKAALQRGNLGLFQTAAHQARTIVRTIRQPQR*
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