Scaffold Ga0134300_1071323

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0134300_1071323

Scaffold Ga0134300_1071323

Overview

Basic Information
Taxon OID	3300014818 Open in IMG/M
Scaffold ID	Ga0134300_1071323 Open in IMG/M
Source Dataset Name	Marine microbial communities to study oil droplet degradation from Trondheimsfjord, Norway - 0152 : 8 days incubation
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Battelle Memorial Institute, Gulf Coast Restoration Organization
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	604
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Microbial Communities To Study Oil Droplet Degradation From Trondheimsfjord, Norway

Source Dataset Sampling Location
Location Name	Norway: Trondheimsfjord
Coordinates	Lat. (^o)	63.43	Long. (^o)	10.43	Alt. (m)		Depth (m)	90
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F071129	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0134300_10713231	F071129	GAG	MKLSDKKTNEIRVIAKYLREQLTNYESFCYAMEELFKGGASIDLDNDGQVIVYTGHLADVENQGEAAPLISGFLMDALENNYLESRKD*

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