NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119954_1003078

Scaffold Ga0119954_1003078


Overview

Basic Information
Taxon OID3300014819 Open in IMG/M
Scaffold IDGa0119954_1003078 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier in Georgia, USA - LL_1011A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Institute of Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4873
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (76.92%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.21Long. (o)-83.96Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011390Metagenome291Y
F033432Metagenome177Y
F057375Metagenome136N

Sequences

Protein IDFamilyRBSSequence
Ga0119954_100307811F057375GGGGGMAETVYFVNASEVFEAIELGDFEQGQFLDQFTFGDSLTDLTLITKQTFVNRLVKFITNCEDVYEKDVMMQNLKEYNFGLLDCIKHVNIEE*
Ga0119954_100307813F011390GAGMKDMEIKTTNYGVCKVKKHKYQTNGNLALSLVDENGEPVVYITTNIFPMAEDEFCANYYNMGATLWNDIVASGLFEQTGEKVPSGYSEYPVCKLVKEVA*
Ga0119954_10030788F033432N/AMNYRIKFLSLWSSIMAEERWHPIDSVDCIPSCKGWNAWAPLCECGSNYCTFKPSGTVEDMKLVIEVRPLAK*
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