NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0120170_1085708

Scaffold Ga0120170_1085708


Overview

Basic Information
Taxon OID3300014823 Open in IMG/M
Scaffold IDGa0120170_1085708 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Nunavut, Canada - A3_80cm_0M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Tennessee
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)649
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost Microbial Communities From Nunavut, Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameCanada: Axel Heiberg Island, Nunavut
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m).8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013246Metagenome / Metatranscriptome273Y
F101752Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0120170_10857081F101752N/AMAALLGANALMLVAGLGMLPLLGVARSWRLLVFRSGLAYLCGILLVGIVSAHLALVHVGFGWIGLALLAALSLGFC
Ga0120170_10857082F013246N/AEEDHMEGRLQSDPRPSQRPPVRLTVVAAAVFVAALAASVLIGANEVRHHVAQSVARDSKLTPAERRHAAGDRLGFDAAAFDAFRVKLRPRERYAVDVPPGAKGLFITRGAVVRAYAAFYFLPAIQVEQADHVFRYRFR*
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