NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0120386_1013974

Scaffold Ga0120386_1013974


Overview

Basic Information
Taxon OID3300014826 Open in IMG/M
Scaffold IDGa0120386_1013974 Open in IMG/M
Source Dataset NameSheep rumen microbial communities from Wyoming, USA - O_aries_Forg_1366
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Missouri
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2134
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Sheep Rumen → Ruminant Gut Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)41.314168Long. (o)-105.584589Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F066344Metagenome / Metatranscriptome126Y
F102225Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0120386_10139744F102225N/AMDNMNRPYEEEYQKYSLHMWGNGDIFAEYWRPFTYDEWIKNGKPINDGGVKLDDGTHHLTTFRYNLKKLY*
Ga0120386_10139746F066344N/AKFLQMMSQNDSKALVARASQINTQAKIAQEEIIHKLKIEKTNVEMQIQGLTDFAPDTTDSLRPGVKGWNPNKWAADLQDAKTRLYTLGVELKIAQATYDEFFGGDDEDVADGE*

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