Scaffold Ga0120104_1021831

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0120104_1021831

Scaffold Ga0120104_1021831

Overview

Basic Information
Taxon OID	3300014829 Open in IMG/M
Scaffold ID	Ga0120104_1021831 Open in IMG/M
Source Dataset Name	Permafrost microbial communities from Nunavut, Canada - A10_35cm_6M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Tennessee
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1148
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost Microbial Communities From Nunavut, Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Canada: Axel Heiberg Island, Nunavut
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)	.35
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006476	Metagenome / Metatranscriptome	372	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0120104_10218312	F006476	GGCGG	VRVEPRLDTCPDLENEVEAHMIHDDIRSLLEAPPKGEDAPTIDTIEHTLTAGYARALALEAEHWRLERRIAEVASNLGGKSQDDEHSELTQLGQRLSAADGDLSNLRKLLSSLRSRADEVRATV*

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