NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182030_10581063

Scaffold Ga0182030_10581063


Overview

Basic Information
Taxon OID3300014838 Open in IMG/M
Scaffold IDGa0182030_10581063 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1088
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001473Metagenome / Metatranscriptome688Y
F036729Metagenome / Metatranscriptome169N
F085625Metagenome / Metatranscriptome111N
F091190Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0182030_105810631F085625N/AARLGVLALELPRAKPDAKTAQPTVLQILFPVDHSGNLTATLVL*
Ga0182030_105810632F001473GGAGMEPEYQTVSQMYERLVSMIRQHNDTGFRLAATDAALQPRNPFEPANRRRPKPAVAIAIGLFAVLVLVFLYFSFQHKG*
Ga0182030_105810633F091190AGGMSIFNQELLPYLASTTDAMTGEPEDARVENEPESRLQEILFSEVLTSLCYWSMVLLLAIVGAGLVCWRLTHPGPSAEPVSDPFGVTTPAWMIVSLPPLGVVAALGQAAWCAARGQRVWRMLATAAGLIAVMGVTTLLETHLAAL*
Ga0182030_105810634F036729GAGGMIHHSENPRREMSNGEAGVVGAILGFGLIALALYLAVARYHIRKEQLVEAALYLFIITAAIAVPVLRRFS
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