NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182027_10032264

Scaffold Ga0182027_10032264


Overview

Basic Information
Taxon OID3300014839 Open in IMG/M
Scaffold IDGa0182027_10032264 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (Illumina Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6790
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045493Metagenome152Y
F075459Metagenome119N
F087112Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0182027_100322641F075459N/AMHYNQLIAVLRKHGFAEGRLIANSKSGYYKRHRSHFVVFNAQVCNLRGRLLKQADLDLTLDGEKLTQAARAAGENFYVLYESDPSPFWKPGSIPMSR
Ga0182027_100322642F045493GGGGGLFFNRVWSSVPEVRDDLLRCAGFKHVVIAEEGALDVGDLKTRVSTPIHVLTLSTAKSVPARILVNCLCVKGAKRPGN*
Ga0182027_100322643F087112N/AMNKQTRKTKLPDDGFMTAPGYPFSARDIFGDLRSRLASEHQRPMSFERLAKILGRSKSTTYNWFDIFHHPHVLGFLCLLERLPPAERQSFIEAHCRAYPTLDDPRVAHAPGKTGQLLELLNQKAGLTIITGGTDFSRTFVFTALAHAASRADGKLPAAAGIDLHRSNLFVPVESLIYINGDLGPDHARRLTHKYGRGF*
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