NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182027_10104730

Scaffold Ga0182027_10104730


Overview

Basic Information
Taxon OID3300014839 Open in IMG/M
Scaffold IDGa0182027_10104730 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (Illumina Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3404
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F075360Metagenome119N
F088757Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0182027_101047303F088757GAGMKNMSRKRAVEVVTLNLPGMLAALTGTRAREWKLRDGPDSGCGVDYYYGHRQGNEAYINIDQGHFTISVAGETLFTGDPAEDPRLKRCVSEY*
Ga0182027_101047304F075360N/AMLQFERINRLSGVCLDEEIPVAWVDNHVIIAQDLSLAVGLRVQYPDTLFVSSEQADELHNAFSSMLNQMAVMGDGEARLQFLTICHNQYDELLDDYLLTMPQGNPLLAQFKRDIGQHYREKAAANQLRRYSCYLFIGIEPIVEYSERIKRHRKLSPREHWARRVSNFLRDTFELSMDEAANMTEEEWNTAVNVLSKQVQQAHAVLKAAGI
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