Basic Information | |
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Taxon OID | 3300014865 Open in IMG/M |
Scaffold ID | Ga0180078_1035591 Open in IMG/M |
Source Dataset Name | Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT499_16_10D |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 801 |
Total Scaffold Genes | 1 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: East River, Colorado | |||||||
Coordinates | Lat. (o) | 38.9231 | Long. (o) | -106.9513 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F002385 | Metagenome / Metatranscriptome | 565 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0180078_10355911 | F002385 | N/A | EQARAYVRQDSTRSPAQRERLLRDLEATSTAHRHITKQSQRLTQSKKLAHCKIVNAYDPTIAPILKGKSNCPAQFGRKTGIMSEPASGFIFANRVPVGNPGDPSYVVPLLDKVQHAIDLVASPNRLRVHSLGGDLGINDAPLRQALHARGILTVGIPTSVNPINPTPSQQEVGVILNTSGLNRIRTPYQVHLACASGHSRPVVEGHIATLMARGADQLRYKGLEGAVLQMGMIVMAHNGAVLMRIGQQRLSKRGQKFRRLLGLKRY |
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