NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0180074_1087204

Scaffold Ga0180074_1087204


Overview

Basic Information
Taxon OID3300014877 Open in IMG/M
Scaffold IDGa0180074_1087204 Open in IMG/M
Source Dataset NameSoil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT366_16_10D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)693
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9228Long. (o)-106.9515Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055285Metagenome139Y
F083636Metagenome / Metatranscriptome112N

Sequences

Protein IDFamilyRBSSequence
Ga0180074_10872041F083636N/ATLAGCASVPGPTPVSVEDVKALMGTWQGWLVTERGFHLINFEIRADGSFEVSGRSVRASGILAMADGQLRFDGTGPWRGTLVPEGSGERRALRLERDDRLYRGTLHPFSHAG*
Ga0180074_10872042F055285N/AMIARSALELHPRARAVMATLLLVLVSLAVPLEASQPLHVHEAGTAGLYNEEHVLASLDSLSGDLPLPDAGPAVFVALVAGARLLARGVRLSSPLPSLS
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