NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0180065_1000507

Scaffold Ga0180065_1000507


Overview

Basic Information
Taxon OID3300014878 Open in IMG/M
Scaffold IDGa0180065_1000507 Open in IMG/M
Source Dataset NameSoil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT200A_16_10D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5957
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9224Long. (o)-106.9518Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F066535Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0180065_10005072F066535AGGAGMSLNKWYETLVNSQVDGSALVAAAAASAIPAAAKFTLPTNYFDTIGKKLRIRATGRISSLITTPGTARFDVRFGATVVFDGLAVLLDTVAGHTNVGWILDIELTCRAIGATGNLMGQGLWTCEDILGVPATAPKGVLSAILPWNSAPAVGNNFDTTATQQIDLFFTQTVATGSMTVHQYEVIAPN*
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