Scaffold Ga0180086_1000033

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0180086_1000033

Scaffold Ga0180086_1000033

Overview

Basic Information
Taxon OID	3300014883 Open in IMG/M
Scaffold ID	Ga0180086_1000033 Open in IMG/M
Source Dataset Name	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT760_16_10D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	14056
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (53.85%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.9227	Long. (^o)	-106.9515	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F051555	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0180086_10000332	F051555	GGAG	MKRSIAIGFMFIALAGLVHTAQAKGDDFGAVVKLIEQFYHVKHKGIPFLARAGIKTTTTLARIAGGPKRQLAEAGSVKVAYFEDQDFNSKGSFTGFRASMGAMLADSWSPLIQVASPKDDEQTYIYLRDAGEKFNVLVVTIEPREACVVQVNLSPRKLAMLMRSPDDMGKEITVDATTHDQE*

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