NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0164311_10023303

Scaffold Ga0164311_10023303


Overview

Basic Information
Taxon OID3300014914 Open in IMG/M
Scaffold IDGa0164311_10023303 Open in IMG/M
Source Dataset NameSubseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay2, Core 4569-9, 9-12 cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3621
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Subseafloor Sediment Microbial Communities From Guaymas Basin, Gulf Of California, Mexico

Source Dataset Sampling Location
Location NameMexico: Gulf of California
CoordinatesLat. (o)27.0151Long. (o)-111.3798Alt. (m)Depth (m)2000
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009582Metagenome315Y
F011723Metagenome287Y
F028993Metagenome189N

Sequences

Protein IDFamilyRBSSequence
Ga0164311_100233034F009582GAGMPAHRGRREFIGGTGREVKEARVDVVLQRVEEKIGKELNVIPSHVYRYGVNNIFQRSFAYLLGWKTNGEPQKVAVTEGGLLKVGISGAGFEEIDVLKGTATISWSDTLEFAWIPNRIRFEAVDYPYVAKFSKDNVTWSEEVYVDGETPRDFDICAKYIKVRRYGGSDATYWIIGMR*
Ga0164311_100233035F011723AGGAGGMVIYNKGLSTDNSTNAGKKIFSLTSKVEEKYKVRRIVITDVLSNPLFMELWIERDRIGEAIPLEVISDATPERIIDVDAEIPEGHEFSVVIKPQTSGNQGSVRGWVEYEIVG*
Ga0164311_100233037F028993AGGTGGMEMVDIVEKAVKKRSERIAVSEAYYKEGVEHPTKDWLEEFKKAKDRRNAGLRRAMEEGLFEIGAERVGTDGWQRATLAKADRWLSGATSAEANEKYAERMRDVAECIERARKAVEGMPTTTVEQRAEKSKRFQIEMAKCMEEKRKRR*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.