Basic Information | |
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Taxon OID | 3300014914 Open in IMG/M |
Scaffold ID | Ga0164311_10035440 Open in IMG/M |
Source Dataset Name | Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay2, Core 4569-9, 9-12 cm |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2957 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Subseafloor Sediment Microbial Communities From Guaymas Basin, Gulf Of California, Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Mexico: Gulf of California | |||||||
Coordinates | Lat. (o) | 27.0151 | Long. (o) | -111.3798 | Alt. (m) | Depth (m) | 2000 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F009582 | Metagenome | 315 | Y |
F028993 | Metagenome | 189 | N |
Protein ID | Family | RBS | Sequence |
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Ga0164311_100354401 | F028993 | N/A | IVEKAVKKRKERIAVSEAYYREGVEAPSKDWLEQFKKAKDRRNAGLRRAIEEGLFEKGAERVGTDGWKRATLAKADRWLTGATSAEAEENYASAMRDVAECIERARKAVEGMPTTTIEQRAEKSKRFQIEMAKCMEAKKKGR* |
Ga0164311_100354404 | F009582 | GAG | MMRKRGRREFIGGTGRAVKEARVDVILQRVNEKIGSELDVSPSHIYRYGVNNIFQRTFAYLLGWKTNGEPQKVAVTEGGLLKVGISGAGFEEIDVLKGTATEEWSDVLEFAWTPNRIRFEAVDYPYIAKFSKDNVTWSEEIYVDGETPRDFDICAKYIKVRRYGGTNATYWIIGMR* |
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