NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134316_1024454

Scaffold Ga0134316_1024454


Overview

Basic Information
Taxon OID3300014960 Open in IMG/M
Scaffold IDGa0134316_1024454 Open in IMG/M
Source Dataset NameSurface water microbial communities from Bangladesh - BaraHaldiaSW0709
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Tennessee
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)673
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Surface Water → Surface And Well Water Microbial Communities From Bara Haldia, Bangladesh

Source Dataset Sampling Location
Location NameBangladesh: Bara Haldia, Matlab upazilla
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014107Metagenome / Metatranscriptome265Y
F068572Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0134316_10244541F014107GAGGMASLNTILSNSESVGINDHRFVGQVISRNQRISTSEVLTVVPFSFDMKPMNYLLYSQNRNLLNALRIPDKALEQYLNFGTTGWLNYIKYQGDMTSGQIASCQWQTASANKVLVLGNLPSITSTKYIVKAGDFCQVGRYAYIATEDVQRGSGSTVNIPVHRTILTTLVAPMYA
Ga0134316_10244542F068572N/AGGGQQIIYNGPYIANMSAIDTQSASQFLAKNKDAVWAANQSANRSIPSSR*
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Institute for Fundamental Biomedical Research
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