NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134526_1000475

Scaffold Ga0134526_1000475


Overview

Basic Information
Taxon OID3300014961 Open in IMG/M
Scaffold IDGa0134526_1000475 Open in IMG/M
Source Dataset NameWastewater microbial communities from medical facility sewage samples near Freiburg, Germany - C1747
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Freiburg
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24662
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (11.54%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Industrial Wastewater → Unclassified → Unclassified → Wastewater → Wastewater Microbial Communities From Medical Facility Sewage Samples Near Freiburg, Germany

Source Dataset Sampling Location
Location NameGermany: Freiburg
CoordinatesLat. (o)48.0Long. (o)8.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032312Metagenome / Metatranscriptome180N
F080163Metagenome115N
F094005Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0134526_100047521F094005N/AMKKEVIKLKEGNSVIYQDKTLMEKANVVSIDKKNGTAILSNKVIITRTTNLEGQFTRLDGKGNAIILPCTTENEQKYNAFVAYHQSKKSLEAIKKWLDDNGKHKDDKTLEKVITLDKKLKKLIEKLNE*
Ga0134526_100047522F032312N/AMARIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGAEQVLKPKNYYHFDSHSNYKGSSMNFDALVCLGFTWFKLLGVALMMLLWPIVFIYALNDGIERYPFKKYAIPYIFILVAWFIIFLYGLVS*
Ga0134526_100047524F080163N/AMKTIKFLQESFETKERFQQEINIKYSYNLDIVESIDFRINQRNIRYFYEAMQNFENSLVDEFKEKKNNFCSANQFLESINDFDKIIFVIITYMKTYFDFCKDYSKISLHVHLVQFDFTTSVLIQGFYNYTHRDLSFSTKLESKVLDSEIELLQEKLDLIREEICELIGVDPNLEKQGHEDNYIFNLNIDSDNQIGFLLQATEL*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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