NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137405_1411018

Scaffold Ga0137405_1411018


Overview

Basic Information
Taxon OID3300015053 Open in IMG/M
Scaffold IDGa0137405_1411018 Open in IMG/M
Source Dataset NameVadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1615
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006165Metagenome / Metatranscriptome380Y

Sequences

Protein IDFamilyRBSSequence
Ga0137405_14110182F006165GGAGMETTVTTLAADSAVSAERTLNAAIVNADITRGFEEYLTLVDQYYAEHVEVSTDVSPDPLVGKRRLKSLLLGFLGPLHMMAEMGGLWVSIHEASIPGDSLDEQHSEWSLELIGVTGRRVTEAWCVRRRWKQSRVVSEYHYAHRQDGEALSFDDLRIGAPRDLDIVRPS*
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