NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0167645_100173

Scaffold Ga0167645_100173


Overview

Basic Information
Taxon OID3300015068 Open in IMG/M
Scaffold IDGa0167645_100173 Open in IMG/M
Source Dataset NameArctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G8C, Adjacent to main proglacial river, end of transect (Watson river))
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Bristol
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9404
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location
Location NameRussell glacier, Kangerlussuaq, Greenland
CoordinatesLat. (o)67.056923Long. (o)-50.459608Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005789Metagenome / Metatranscriptome390Y
F032367Metagenome / Metatranscriptome180Y

Sequences

Protein IDFamilyRBSSequence
Ga0167645_1001737F005789GGAMATVVALDASPTTVLRSMRGEIIDARIAYPDVLHVEGRDAHGELWRLATQDAEWSPSDPAQLAGHSINDAEIDENSGELRCKLSDGSVLDIKPASGEAEDDPPYWELISPAGVVLEFGPGVRWQISSADAPASSRR*
Ga0167645_1001738F032367GAGMTRKRDIKQFRPACKEAGLTVDERYEASQALHADKESGGNGQQDMSYGELLAWLREWKASWRPS*

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